PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang11g06000.1
Common NameLR48_Vigan01g211400
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 158aa    MW: 17425.5 Da    PI: 5.6575
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang11g06000.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP244.24.8e-143441155
             AP2 11 krgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    ++g+Wv+eIr+p++   + r++lg+f t+++Aa+a++ a++ ++g
  Vang11g06000.1  3 QWGKWVSEIREPRK---KSRIWLGTFPTPDMAARAHDVAALTIKG 44
                    6**********843...6**********************99876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.33E-26154No hitNo description
PROSITE profilePS5103219.744152IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.1E-26153IPR001471AP2/ERF domain
SMARTSM003807.6E-28158IPR001471AP2/ERF domain
SuperFamilySSF541713.01E-17253IPR016177DNA-binding domain
PfamPF008471.7E-8344IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MRQWGKWVSE IREPRKKSRI WLGTFPTPDM AARAHDVAAL TIKGSSAFLN FPELAAELPR  60
PTTNSPKDIQ VAAAKAAALD FRPRSHEAES ELSRGGSISN SSSNSSLKSE DDTFMDLPDL  120
SLDLSHGVDK FHYSSAWLVA GSELGFRLEE PFLWESY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014508177.11e-112PREDICTED: ethylene-responsive transcription factor ERF039-like
SwissprotQ8LBQ74e-51ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A0L9TPQ41e-113A0A0L9TPQ4_PHAAN; Uncharacterized protein
STRINGGLYMA05G04920.14e-70(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35700.12e-41ERF family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]